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AVRX > SEC Filings for AVRX > Form 10-K on 31-Mar-2009All Recent SEC Filings

Show all filings for AVALON PHARMACEUTICALS INC | Request a Trial to NEW EDGAR Online Pro

Form 10-K for AVALON PHARMACEUTICALS INC


31-Mar-2009

Annual Report


ITEM 7. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS
Overview
We are a biopharmaceutical company focused on the discovery, development and commercialization of first-in-class cancer therapeutics. Our lead product candidate, AVN944, an IMPDH inhibitor, is in Phase IIa clinical development. We have preclinical programs to develop inhibitors of the beta-catenin and Aurora/Centrosome pathways, discovery programs for inhibitors of the Survivin and Myc pathways, and partnerships with Merck, AstraZeneca, ChemDiv, Medarex and Novartis. We use AvalonRx®, our proprietary platform which is based on large-scale biomarker identification and monitoring, to discover and develop therapeutics for pathways that have historically been characterized as "undruggable."
Since our inception, our operations have consisted primarily of developing AvalonRx®, utilizing our technology to seek to discover and develop novel cancer therapeutics, and the in-license and development of AVN944. During that period, we have generated limited revenue from collaborative partners, and have had no revenue from product sales. Our operations have been funded principally through the offering of equity securities and debt financings.
We have never been profitable and, as of December 31, 2008, we had an accumulated deficit of $146.2 million. We had net losses of $21.8 million for the year ended December 31, 2008, $21.7 million for the year ended December 31, 2007, and $17.1 million for the year ended December 31, 2006. We expect to incur significant operating losses for the foreseeable future as we advance our drug candidates from discovery through preclinical testing and clinical trials and seek regulatory approval and eventual commercialization. We will need to generate significant revenues to achieve profitability, and we may never do so.
As of December 31, 2008, we had cash, cash equivalents and marketable securities of approximately $5.8 million. We currently estimate that our existing capital resources will not be sufficient to fund our current operations significantly beyond the end of May 2009, by which time our pending merger with a subsidiary of Clinical Data is expected to close. If our proposed merger does not close soon after the end of May 2009, we would need to raise additional funds to continue operations and to repay our secured loan from Clinical Data. See "- Pending Acquisition by Clinical Data" below. In light of the proposed merger, we do not expect to seek to raise additional capital. Should the merger not close or if the closing is delayed beyond May 2009, there is no assurance that we would be able to raise capital sufficient to enable us to continue our operations significantly beyond the end of May 2009. In the event we are unable to successfully raise additional capital in such circumstances, we will not have sufficient cash flows and liquidity to finance our business operations as currently contemplated. Accordingly, in such circumstances we would be compelled to reduce general and administrative expenses and


delay research and development projects and the purchase of scientific equipment and supplies until we were able to obtain sufficient financing.
On August 13, 2008, we restructured our operations to focus on the pre-clinical and clinical development of our beta-catenin inhibitor program and on our existing collaborations, such as with Merck. We curtailed our other development programs and are evaluating the clinical data from our AVN944 development program to assess strategies for further development of AVN944. In connection with the restructuring of our operations, we reduced our workforce by approximately one third, or 19 employees. We recorded restructuring charges related to these actions of $928,000 in the third quarter of 2008. Pending Acquisition by Clinical Data
On October 27, 2008, we entered into a merger agreement with Clinical Data and API, an indirect wholly-owned subsidiary of Clinical Data. The merger agreement provides that, upon the terms and subject to the conditions set forth in the merger agreement, API will be merged with and into Avalon, with Avalon continuing as the surviving corporation and a subsidiary of Clinical Data. In connection with entering into the merger agreement with Clinical Data, we borrowed $3 million from Clinical Data under a secured loan maturing on April 30, 2009 to fund our short-term on-going operations, entered into a license agreement with Clinical Data under which Clinical Data received an exclusive license (subject to certain exceptions) to AvalonRx® in exchange for a one time license fee of $1 million, and engaged in a private placement with Clinical Data of Avalon common stock and warrants for a cash payment of $237,338 from Clinical Data. As a result of entering into the merger agreement and receiving the $3 million secured loan from Clinical Data, we were notified by Manufacturers and Traders Trust Company (M&T Bank) on October 29, 2008, that we were in default under the terms of our letter of credit with M&T Bank to the Maryland Industrial Development Financing Authority (MIDFA). On October 30, 2008, we paid off all amounts due M&T Bank under the letter of credit and as a result, we have no further obligations under the letter of credit or the financing arrangement with MIDFA. See also Item 1 of this Annual Report on Form 10-K under the heading "Business - Pending Acquisition by Clinical Data". Pending Nasdaq Delisting
We are currently subject to delisting from the Nasdaq Global Market because we are not in compliance with the minimum stockholders' equity requirement of $10 million for continued listing on the Nasdaq Global Market as set forth in Nasdaq Marketplace Rule 4450(a)(3). See Item 1 of this Annual Report on Form 10-K under the heading "Business-Pending Nasdaq Delisting" for a description of this matter.
Recent Developments
On March 30, 2009, in order to fund our continuing operations through the closing of the merger, we borrowed an additional $1 million from Clinical Data under the terms of our note purchase agreement with Clinical Data. In addition, on March 30, 2009, Clinical Data extended the maturity of its prior $3 million secured loan to us from April 30, 2009 to May 31, 2009.
As with our original $3 million loan from Clinical Data, the additional $1 million loan from Clinical Data is evidenced by a term note that bears interest at a fixed rate of seven percent per annum and matures on May 31, 2009, unless accelerated pursuant to its terms. We have the right to prepay the term note, together with any accrued interest, at any time without penalty. The maturity of the term note accelerates if there is a default under the terms of the note purchase agreement or related documents, including any default, breach or termination of our license agreement with Clinical Data or of the merger agreement (other than a termination of the merger agreement as a result of a failure to obtain the approval by our stockholders of the merger). The additional $1 million loan is secured by collateral consisting of certain of our intellectual property rights.
Financial Operations Overview
Revenue
We have not generated any revenue from sales of commercial products and do not expect to generate any product revenue for the foreseeable future. To date, our revenue has consisted of collaboration revenue.


Collaboration Revenue. Since inception, we have generated revenue solely in connection with our collaboration and pilot study agreements. Our collaborations with Merck, AstraZeneca and Novartis include upfront payments, research funding, and/or payments for the achievement of certain discovery and development related milestones. During 2008, we recognized revenue from work performed and expenses incurred on our collaboration agreement with Novartis and recognized no revenue from our other collaboration agreements. Research and Development Expense
Research and development expense consists of expenses incurred in connection with developing and advancing our drug discovery technology and identifying and developing our drug candidates and supporting our collaborative relationships. These expenses consist primarily of salaries and related expenses, the purchase of laboratory supplies, access to data sources, facility costs, costs for preclinical development and expenses related to our in-license and clinical trials of AVN944. Other than payments made in advance for goods or services received for use in future research and development activities, we charge all research and development expenses to operations as incurred.
Our total research and development expenses for the years ended December 31, 2008, 2007 and 2006 were $15.5 million, $15.3 million, and $13.3 million, respectively. During the year ended December 31, 2008, we incurred expenses of approximately $4.6 million related to the development of AVN944. Other than for our clinical candidate AVN944, we do not currently track our internal research and development costs or our personnel and related costs on an individual drug candidate basis. We use our research and development resources, including employees and our drug discovery technology, across multiple drug development programs. As a result, we cannot state precisely the costs incurred for each of our research and development programs or our clinical and preclinical drug candidates. During 2008, we estimate that 20% and 10% of research and development expenses were attributable to research related to our beta-catenin and Aurora/Centrosome pathway programs, respectively. We estimate that 22% of research and development expenses were attributable to collaborations with AstraZeneca, Merck, ChemDiv, Medarex and Novartis. The remaining expenses included all personnel and related expenses and other research and development expenses not attributable to any specified discovery and development program. We begin to track development costs for a program after an individual molecule has been selected for formal pre-clinical development. Research and development expenses as a percentage of total operating expenses for the years ended December 31, 2008, 2007 and 2006 were 69%, 65% and 63%, respectively.
We expect our research and development costs to be substantial as we advance our drug candidates into preclinical testing and clinical trials. Based on the results of our preclinical studies, we expect to selectively advance some drug candidates into clinical trials. We anticipate that we will select drug candidates and research projects for further development on an on-going basis in response to their preclinical and clinical success and commercial potential. We are currently conducting Phase I clinical trials for AVN944 in patients with hematological cancer and Phase IIa clinical trials for patients with pancreatic cancer. In August 2008, we announced that we had reached a likely maximum tolerated dose of AVN944 in both the on-going Phase I clinical trial and in the Phase IIa trial. We are currently assessing various alternatives regarding the internal or external development of AVN944. General and Administrative
Our general and administrative expense consists primarily of salaries and related expenses for personnel in administrative, finance, business development and human resource functions. Other general and administrative costs include legal costs of pursuing patent protection of our intellectual property and other fees for legal services.
Quarterly Results May Fluctuate
We anticipate that our quarterly results of operations will fluctuate for several reasons, including:
• the timing and extent of our development activities and clinical trials for AVN944 and any other biopharmaceutical drug candidates that we may develop in the future;

• the timing and outcome of our applications for regulatory approval for our drug candidates;

• the timing and extent of our adding new employees and infrastructure; and

• the timing of any milestone payments, license fees, or royalty payments that we may be required to make or that we may receive from collaborations.


Critical Accounting Policies and Significant Judgments and Estimates This discussion and analysis of our financial condition and results of operations is based on our financial statements, which have been prepared in accordance with U.S. generally accepted accounting principles, or GAAP. The preparation of these financial statements requires management to make estimates and judgments that affect the reported amounts of assets, liabilities and expenses and the disclosure of contingent assets and liabilities at the date of the financial statements, as well as revenue and expenses during the reporting periods. We evaluate our estimates and judgments on an on-going basis. We base our estimates on historical experience and on various other factors we believe are reasonable under the circumstances, the results of which form the basis for making judgments about the carrying value of assets and liabilities that are not readily apparent from other sources. Actual results could therefore differ materially from those estimates under different assumptions or conditions.
Our significant accounting policies are more fully described in Note 5 to our audited financial statements included under Item 8 of this Annual Report on Form 10-K. We believe that the following critical accounting policies reflect our more significant estimates and assumptions used in the preparation of our financial statements.
Revenue Recognition
Revenue is recognized when there is persuasive evidence that an agreement exists, delivery has occurred, the price is fixed and determinable, and collection is reasonably assured. Payments received in advance of work performed are recorded as deferred revenue and recognized ratably over the performance period. Milestone payments are recognized as revenue when milestones, as defined in the contract, are achieved.
Accrued Expenses
As part of the process of preparing financial statements, we are required to estimate accrued expenses. This process involves identifying services which have been performed on our behalf, and estimating the level of service performed and the associated cost incurred for such service as of each balance sheet date. Examples of expenses for which we accrue estimated liabilities include services provided by contract research organizations in connection with our preclinical testing, and legal and other professional services. In connection with such service fees, our estimates are most affected by our understanding of the status and timing of services provided relative to the actual levels of services incurred by such service providers. The majority of our service providers invoice us in arrears for services performed. In the event that we do not identify certain costs, which have begun to be incurred, or if we under- or over-estimate the level of services performed or the costs of such services, our reported expenses for such period would be too low or too high. The date on which services commence, the level of services performed on or before a given date and the cost of such services are often determined based on subjective judgments. We make these judgments based upon the facts and circumstances known to us in accordance with generally accepted accounting principles. Stock-Based Compensation
We account for stock-based compensation expense using the fair value recognition provisions of FASB Statement No. 123(R), "Share-Based Payment" ("Statement 123(R)"). The fair value of each option grant is estimated on the date of grant using the Black-Scholes option pricing fair value model and recognized as compensation expense over the vesting period of the award using the accelerated attribution method.
For the year ended December 31, 2008, we recorded $310,000 of stock-based compensation expense, of which $109,000 was included in research and development expense and $201,000 was included in general and administrative expense. Since we continue to operate in a net loss, our stock-based compensation expense had no tax-related effects or an impact on cash flow from operations and cash flow from financing activities for the year ended December 31, 2008. As of December 31, 2008, our unrecognized stock-based compensation expense of approximately $293,000 remains to be recognized over a weighted-average period of approximately 2.35 years.


We estimate the fair value of stock options granted during the year ended December 31, 2008 using the Black-Scholes option-pricing model. The assumptions used under this model for the year ended December 31, 2008 are as follows:
(i) expected term of 6.9 years based on the simplified method for estimating the expected term of stock options; (ii) expected volatility of 66.46% based on historical and peer volatility data; (iii) weighted average risk-free interest rate of 3.48% based on the U.S. Treasury yield curve in effect at the time of grant for periods corresponding with the expected term of the option; and
(iv) expected dividend yield of zero percent. The fair value of stock options granted is recognized as expense over the service period, net of estimated forfeitures. Prior to 2008, we calculated a 4.20% annual forfeiture rate. The estimation of forfeitures requires judgment, and to the extent actual results or updated estimates differ from our current estimates, such amounts are recorded as a cumulative adjustment in the same period estimates are revised. In 2008, we adjusted our forfeiture rate to 9.0% to reflect actual cumulative forfeitures to date. The Black-Scholes option pricing model requires the input of highly subjective assumptions. Because our employee stock options have characteristics significantly different from those of traded options, and because changes in the subjective input assumptions can materially affect the fair value estimate, in management's opinion, the existing models may not provide a reliable single measure of the fair value of our employee stock. In addition, management will continue to assess the assumptions and methodologies used to calculate estimated fair value of share-based compensation. Circumstances may change and additional data may become available over time, which result in changes to these assumptions and methodologies, and which could materially impact our fair value determination. Results of Operations
Year Ended December 31, 2008 Compared to Year Ended December 31, 2007 Revenue. Total revenues for the twelve months ended December 31, 2008 were $0.3 million, a decrease of $0.5 million from the prior year. All revenue in 2008 and 2007 was attributable to our collaboration agreement with Novartis and no revenue was recognized under our other collaboration agreements.
Research and Development. Research and development expenses increased by $0.2 million, or 1%, to $15.5 million for the twelve months ended December 31, 2008 from $15.3 million for the same period in 2007. The increase in research and development expenses was primarily attributable to increases in clinical trial costs related to our AVN944 drug candidate and AVN316 preclinical drug candidate, somewhat offset by decreases in salaries and benefits as a result of the August 2008 reduction in force and a decrease in stock compensation costs.
Research and development expenses consist of direct costs which include salaries and related costs of research and development personnel, and the costs of consultants, materials and supplies associated with research and development projects. Indirect research and development costs include facilities, depreciation, patents and other indirect overhead costs.
General and Administrative. General and administrative expenses decreased by $2.9 million, or 36%, to $5.3 million for the twelve months ended December 31, 2008 from $8.2 million for the same period in 2007. This decrease is primarily attributable to a decrease in salaries and benefits as a result of the August 2008 reduction-in-force and a decrease in stock compensation costs.
Restructuring and merger-related costs. Restructuring and merger-related costs were $1.6 million in 2008 and represented severance and related costs associated with our August 2008 reduction-in-force as well as legal and other professional fees incurred in connection with our proposed merger with Clinical Data.
Interest Income. Interest income decreased by $1.0 million, or 64%, to $0.6 million for the twelve months ended December 31, 2008, compared to $1.6 million for the same period in 2007. The decrease in interest income is a result of interest earned on lower average cash balances at lower average interest rates.
Interest Expense. Interest expense decreased by $65,000, or 10%, to $568,000 for the twelve months ended December 31, 2008, compared to $633,000 for the same period in 2007. The decrease in interest expense was primarily related to lower interest rates and lower average debt balances. Interest expense in 2008 included $174,000 of deferred financing costs charged to interest expense upon the early retirement of our letter of credit with M&T Bank and our financing arrangement with MIDFA.


Other Income. Other income increased by $37,000, or 34%, to $147,000 for the twelve months ended December 31, 2008, compared to $110,000 for the same period in 2007. The increase in other income was primarily related to the income from subletting part of our facility and the provision of shared services to subtenants.
Year Ended December 31, 2007 Compared to Year Ended December 31, 2006 Revenue. Total revenues for the twelve months ended December 31, 2007 were $0.8 million, a decrease of $1.9 million from the prior year. All 2007 revenue was attributable to our collaboration agreement with Novartis and no revenue was recognized under our other collaboration agreements. During 2006, we recognized revenue from our collaboration agreements with AstraZeneca, Novartis and the University of Louisville.
Research and Development. Research and development expenses increased by $2.0 million, or 15%, to $15.3 million for the twelve months ended December 31, 2007 from $13.3 million for the same period in 2006. The increase in research and development expenses was primarily attributable to increases in clinical trial costs related to our AVN944 drug candidate, increases in laboratory supplies expense, and an increase in salaries and benefits expense related to new hires.
Research and development expenses consist of direct costs which include salaries and related costs of research and development personnel, and the costs of consultants, materials and supplies associated with research and development projects. Indirect research and development costs include facilities, depreciation, patents and other indirect overhead costs.
General and Administrative. General and administrative expenses increased by $0.5 million, or 8%, to $8.2 million for the twelve months ended December 31, 2007 from $7.7 million for the same period in 2006. This increase is primarily attributable to an increase in consulting costs and an increase in compensation expense related to stock options.
Interest Income. Interest income increased by $0.3 million, or 23%, to $1.6 million for the twelve months ended December 31, 2007, compared to $1.3 million for the same period in 2006. The increase in interest income is a result of interest earned on higher average cash balances at higher average interest rates.
Interest Expense. Interest expense decreased by $176,000, or 22%, to $633,000 for the twelve months ended December 31, 2007, compared to $808,000 for the same period in 2006. The decrease in interest expense was primarily related to lower balances on our long term debt. This decrease was offset, in part, by higher average interest rates on our development bond financing.
Other Income. Other income decreased by $514,000, or 82%, to $110,000 for the twelve months ended December 31, 2007, compared to $624,000 for the same period in 2006. The decrease in other income was primarily related to the discontinuation, during the first half of 2007, of income from subletting part of our facility and the provision of shared services to subtenants. Liquidity and Capital Resources
Overview
Our primary cash requirements are to:
• fund our research, development and clinical programs;

• obtain regulatory approvals;

• prosecute, defend and enforce any patent claims and other intellectual property rights;

• fund general corporate overhead; and

• support our debt service requirements and contractual obligations.


Our cash requirements could change materially as a result of the progress of our research and development and clinical programs, licensing activities, acquisitions, divestitures or other corporate developments.
We have incurred operating losses since our inception and historically have financed our operations principally through public stock offerings, debt financings, private placements of equity securities, strategic collaborative agreements that include research and development funding and development milestones, and investment income.
In evaluating alternative sources of financing, we consider, among other things, the dilutive impact, if any, on our stockholders, the ability to leverage stockholder returns through debt financing, the particular terms and conditions of each alternative financing arrangement and our ability to service our obligations under such financing arrangements.
As of December 31, 2008, we had cash, cash equivalents and marketable securities of approximately $5.8 million, which is a decrease of $22.7 million from December 31, 2007. Our funds were invested in investment grade and United States government securities. In connection with entering into the merger agreement with Clinical Data, on October 27, 2008, we borrowed $3 million from Clinical Data under a secured loan to fund our short-term on-going operations, entered into a license agreement with Clinical Data under which Clinical Data received an exclusive license (subject to certain exceptions) to AvalonRx® in exchange for a one time license fee of $1 million, and engaged in a private placement with Clinical Data of common stock and warrants for a cash payment of $237,338 from Clinical Data. As a result of entering into the merger agreement and receiving the $3 million secured loan from Clinical Data, we were required under the terms of our letter of credit with M&T Bank to MIDFA to pay off all amounts due under the letter of credit. On October 30, 2008, we paid off all amounts due M&T Bank under the letter of credit and as a result, we have no further obligations under the letter of credit or our financing arrangement with MIDFA.
Sources and Uses of Cash
Operating Activities. Net cash used in operating activities was $18.4 million, $18.9 million and $11.9 million in 2008, 2007 and 2006, respectively. In 2008, our net loss of $21.8 million was reduced by non-cash charges of $2.2 million, primarily for depreciation and amortization and stock compensation. In addition, changes in net operating assets and liabilities in 2008 provided $1.2 million in cash from operating activities.
Investing Activities. Net cash provided by investing activities was $21.2 million in 2008, net cash used in investing activities was $4.6 million in 2007, and net cash provided by investing activities was $0.4 million in 2006. Proceeds from the sale and maturity of marketable securities were the primary source of cash from investing activities, providing $28.6 million, $39.2 million, and $20.7 million in 2008, 2007 and 2006, respectively. Cash used in investing activities principally represents the amount used to purchase property and equipment and marketable securities, net of proceeds from the sale and maturity of marketable securities.
Financing Activities. Net cash used in financing activities was $4.1 million in 2008, while net cash provided by financing activities was $26.7 million and . . .

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